Pitt, D., Sevane, N., Nicolazzi, E.L., MacHugh, D.E., Park, S.D.E., Colli, L., Martinez, R., Bruford, M.W., Orozco-terWengel, P. Domestication of cattle: Two or three events? (2019) Evolutionary Applications, 12 (1), pp. 123-136.

Bernardi J., Stagnati L., Lucini L., Rocchetti G., Lanubile A., Cortellini C., De Poli G., Busconi M., Marocco A. Phenolic profile and susceptibility to fusarium infection of pigmented maize cultivars.  (2018) Frontiers in Plant Science 1664-462X.

Lucini, L., Baccolo, G., Rouphael, Y., Colla, G., Bavaresco, L., Trevisan, M. Chitosan treatment elicited defence mechanisms, pentacyclic triterpenoids and stilbene accumulation in grape (Vitis vinifera L.) bunches
(2018) Phytochemistry, 156, pp. 1-8.

Bertolini, F., Servin, B., Talenti, A., Rochat, E., Kim, E.S., Oget, C., Palhière, I., Crisà, A., Catillo, G., Steri, R., Amills, M., Colli, L., Marras, G., Milanesi, M., Nicolazzi, E., Rosen, B.D., Van Tassell, C.P., Guldbrandtsen, B., Sonstegard, T.S., Tosser-Klopp, G., Stella, A., Rothschild, M.F., Joost, S., Crepaldi, P. Signatures of selection and environmental adaptation across the goat genome post-domestication 06 Biological Sciences 0604 Genetics (2018) Genetics Selection Evolution, 50 (1), art. no. 57.

Colli, L., Milanesi, M., Talenti, A., Bertolini, F., Chen, M., Crisà, A., Daly, K.G., Del Corvo, M., Guldbrandtsen, B., Lenstra, J.A., Rosen, B.D., Vajana, E., Catillo, G., Joost, S., Nicolazzi, E.L., Rochat, E., Rothschild, M.F., Servin, B., Sonstegard, T.S., Steri, R., Van Tassell, C.P., Ajmone-Marsan, P., Crepaldi, P., Stella, A. Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes (2018) Genetics Selection Evolution, 50 (1), art. no. 58.

Rocchetti, G., Gatti, M., Bavaresco, L., Lucini, L. Untargeted metabolomics to investigate the phenolic composition of Chardonnay wines from different origins (2018) Journal of Food Composition and Analysis, 71, pp. 87-93. 

Colli, L., Milanesi, M., Vajana, E., Iamartino, D., Bomba, L., Puglisi, F., Corvo, M.D., Nicolazzi, E.L., Ahmed, S.S.E., Herrera, J.R.V., Cruz, L., Zhang, S., Liang, A., Hua, G., Yang, L., Hao, X., Zuo, F., Lai, S.-J., Wang, S., Liu, R., Gong, Y., Mokhber, M., Mao, Y., Guan, F., Vlaic, A., Vlaic, B., Ramunno, L., Cosenza, G., Ahmad, A., Soysal, I., Ünal, E.Ö., Ketudat-Cairns, M., Garcia, J.F., Utsunomiya, Y.T., Baruselli, P.S., Amaral, M.E.J., Parnpai, R., Drummond, M.G., Galbusera, P., Burton, J., Hoal, E., Yusnizar, Y., Sumantri, C., Moioli, B., Valentini, A., Stella, A., Williams, J.L., Ajmone-Marsan, P. New insights on water buffalo genomic diversity and post-domestication migration routes from medium density SNP chip data (2018) Frontiers in Genetics, 9 (MAR), art. no. 53.

Ibnelbachyr, M., Colli, L., Boujenane, I., Chikhi, A., Nabich, A., Piro, M. Genetic differentiation of draa indigenous breed and relationships with other goat populations assessed by microsatellite DNA markers
(2017) Iranian Journal of Applied Animal Science, 7 (4), pp. 621-629.

Utsunomiya, Y.T., Milanesi, M., Utsunomiya, A.T.H., Torrecilha, R.B.P., Kim, E.-S., Costa, M.S., Aguiar, T.S., Schroeder, S., Do Carmo, A.S., Carvalheiro, R., Neves, H.H.R., Padula, R.C.M., Sussai, T.S., Zavarez, L.B., Cipriano, R.S., Caminhas, M.M.T., Hambrecht, G., Colli, L., Eufemi, E., Ajmone-Marsan, P., Cesana, D., Sannazaro, M., Buora, M., Morgante, M., Liu, G., Bickhart, D., Van Tassell, C.P., Sölkner, J., Sonstegard, T.S., Garcia, J.F. A PLAG1 mutation contributed to stature recovery in modern cattle (2017) Scientific Reports, 7 (1), art. no. 17140.

Stucki, S., Orozco-terWengel, P., Forester, B.R., Duruz, S., Colli, L., Masembe, C., Negrini, R., Landguth, E., Jones, M.R., Bruford, M.W., Taberlet, P., Joost, S. High performance computation of landscape genomic models including local indicators of spatial association (2017) Molecular Ecology Resources, 17 (5), pp. 1072-1089.

Soffritti, G., Busconi, M., Sánchez, R.A., Thiercelin, J.-M., Polissiou, M., Roldán, M., Fernández, J.A. Genetic and epigenetic approaches for the possible detection of adulteration and auto-adulteration in saffron (Crocus sativus L.) Spice (2016) Molecules, 21 (3), art. no. 343

Busconi, M., Colli, L., Sánchez, R.A., Santaella, M., De-Los-Mozos Pascual, M., Santana, O., Roldán, M., Fernández, J.-A. AFLP and MS-AFLP analysis of the variation within saffron crocus (Crocus sativus L.) germplasm (2015) PLoS ONE, 10 (4), art. no. e0123434

Bruford, M.W., Ginja, C., Hoffmann, I., Joost, S., Wengel, P.O., Alberto, F.J., Amaral, A.J., Barbato, M., Biscarini, F., Colli, L., Costa, M., Curik, I., Duruz, S., Ferencakovic, M., Fischer, D., Fitak, R., Groeneveld, L.F., Hall, S.J.G., Hanotte, O., Hassan, F.-U., Helsen, P., Iacolina, L., Kantanen, J., Leempoel, K., Lenstra, J.A., Ajmone-Marsan, P., Masembe, C., Megens, H.-J., Miele, M., Neuditschko, M., Nicolazzi, E.L., Pompanon, F., Roosen, J., Sevane, N., Smetko, A., Štambuk, A., Streeter, I., Stucki, S., Supakorn, C., Da Gama, L.T., Tixier-Boichard, M., Wegmann, D., Zhan, X. Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025 (2015) Frontiers in Genetics, 6 (OCT), art. no. 314

Bernardi J., Marocco A., Caruso P., Licciardello C.  Molecular Characterization of Citrus Cultivars: Insight from Recent Studies.  In: Hayat K (Ed.), Citrus - Molecular Phylogeny, Antioxidant Properties and Medicinal Uses. Nova Science Publishers, Inc., New York, pp. 13-30, ISBN 978-1-63117-985-3 (2014)

Bonfiglio, S., Ginja, C., de Gaetano, A., Achilli, A., Olivieri, A., Colli, L., Tesfaye, K., Agha, S.H., Gama, L.T., Cattonaro, F., Penedo, M.C.T., Ajmone-Marsan, P., Torroni, A., Ferretti, L. Origin and spread of Bos taurus: New clues from mitochondrial genomes belonging to haplogroup T1 (2012) PLoS ONE, 7 (6), art. no. e38601

Vahidi SM, Tarang AR, Naqvi AU, Falahati Anbaran M, Boettcher P, Joost S, Colli L, Garcia JF, Ajmone-Marsan P. Investigation of the genetic diversity of domestic Capra hircus breeds reared within an early goat domestication area in Iran. Genet Sel Evol. 2014 Apr 17;46:27. Doi: 10.1186/1297-9686-46-27.

Utsunomiya YT, Bomba L, Lucente G, Colli L, Negrini R, Lenstra JA, Erhardt G, Garcia JF, Ajmone-Marsan P1; European Cattle Genetic Diversity Consortium Revisiting AFLP fingerprinting for an unbiased assessment of genetic structure and differentiation of taurine and zebu cattle. BMC Genet. 2014 Apr 17;15:47. doi: 10.1186/1471-2156-15-47.

Taberlet P, Zimmermann NE, Englisch T, Tribsch A, Holderegger R, Alvarez N, Niklfeld H, Coldea G, Mirek Z, Moilanen A, Ahlmer W, Marsan PA, Bona E, Bovio M, Choler P, Cieślak E, Colli L, Cristea V, Dalmas JP, Frajman B, Garraud L, Gaudeul M, Gielly L, Gutermann W, Jogan N, Kagalo AA, Korbecka G, Küpfer P, Lequette B, Letz DR, Manel S, Mansion G, Marhold K, Martini F, Negrini R, Niño F, Paun O, Pellecchia M, Perico G, Piękoś-Mirkowa H, Prosser F, Puşcaş M, Ronikier M, Scheuerer M, Schneeweiss GM, Schönswetter P, Schratt-Ehrendorfer L, Schüpfer F, Selvaggi A, Steinmann K, Thiel-Egenter C, van Loo M, Winkler M, Wohlgemuth T, Wraber T, Gugerli F; IntraBioDiv Consortium, Vellend M. Genetic diversity in widespread species is not congruent with species richness in alpine plant communities. Ecol Lett. 2012 Dec;15(12):1439-48. doi: 10.1111/ele.12004. Epub 2012 Sep 25.

McClure M, Kim E, Bickhart D, Null D, Cooper T, Cole J, Wiggans G, Ajmone-Marsan P, Colli L, Santus E, Liu GE, Schroeder S, Matukumalli L, Van Tassell C, Sonstegard T. Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2. PLoS One. 2013;8(3):e59251. doi: 10.1371/journal.pone.0059251. Epub 2013 Mar 20.

Feng-Hua Lv, Saif Agha, Juha Kantanen, Licia Colli, Sylvie Stuck, James W. Kijas, Stéphane Joost, Meng-Hua Li, and Paolo Ajmone Marsan  Adaptations to Climate-Mediated Selective Pressures in Sheep. Mol Biol Evol (2014) doi: 10.1093/molbev/msu264 First published online: September 23, 2014

Johannes A. Lenstra  , Paolo Ajmone-Marsan, Albano Beja-Pereira, Ruth Bollongino, Daniel G. Bradley , Licia Colli , Anna De Gaetano , Ceiridwen J. Edwards, Marleen Felius, Luca Ferretti, Catarina Ginja, Peter Hristov, Juha Kantanen, Juan Pedro Lirón , David A. Magee , Riccardo Negrini  and Georgi A. Radoslavov Meta-Analysis of Mitochondrial DNA Reveals Several Population Bottlenecks during Worldwide Migrations of Cattle.
Diversity 2014, 6(1), 178-187; doi:10.3390/d6010178

Colli Licia, Perrotta G, Negrini Riccardo, Bomba Lorenzo, Bigi D, Zambonelli P, Verini Supplizi A, Liotta L, Ajmone-Marsan Paolo Detecting population structure and recent demographic history in endangered livestock breeds: the case of the Italian autochthonous donkeys. Anim Genet. 2013 Feb;44(1):69-78. doi: 10.1111/j.1365-2052.2012.02356.x. Epub 2012 Apr 17.

Colli L., Negrini R., Ajmone Marsan P., Globaldiv Consortium Molecular markers, genome and animal genetic resources.

Matteo Busconi, Licia Colli, Rosa Ana Sánchez, Marcela Santaella, Marcelino De-Los-Mozos Pascual, Omar Santana, Marta Roldán, and José-Antonio Fernández AFLP and MS-AFLP Analysis of the Variation within Saffron Crocus (Crocus sativus L.) Germplasm.PLoS One. 2015; 10(4): e0123434. Published online 2015 Apr 17. doi:  10.1371/journal.pone.0123434

Michael W. Bruford , Catarina Ginja, Irene Hoffmann, Stéphane Joost, Pablo OrozcoterWengel , Florian Alberto , Andreia Amaral, Mario Barbato , Filippo Biscarini, Licia Colli, Mafalda Costa, Ino Curik , Solange Duruz, Maja Ferenčaković , Daniel Fischer, Robert Fitak, Linn Fenna Groeneveld, Stephen Hall, Olivier H. Hanotte, Faiz-ul Hassan, Philippe Helsen, Laura Iacolina, Juha Kantanen, Kevin Leempoel, Johannes A. Lenstra, Paolo Ajmone Marsan, Charles Masembe, Hendrik-Jan Megens, Mara J Miele, Markus Neuditschko, Ezequiel L Nicolazzi, Francois Pompanon, Jutta Roosen, Natalia Sevane, Anamarija Smetko, Anamaria Štambuk, Ian Streeter, Sylvie Stucki, China Supakorn, Luis Telo da Gama, Michèle Tixier-Boichard , Daniel Wegmann , Xiangjiang Zhan  Prospects and Challenges for the Conservation of Farm Animal Genomic Resources, 2015-2025.Front. Genet. | doi: 10.3389/fgene.2015.00314

Ajmone Marsan Paolo; Colli Licia; Nicolazzi El; Negrini Riccardo; Zjalic M; Rosati A New approaches to investigate the genetic basis of animal adaptation to different environments.  Animal farming and environmental interactions in the Mediterranean region. 2012 Volume 131 of the series EAAP – European Federation of Animal Sciences pp 15-22

Ajmone Marsan Paolo; Colli Licia; Han J; Achilli A; Lancioni H; Joost Stephane; Crepaldi Paola; Pilla Fabio; Stella A; Taberlet P; Boettcher Paul John; Negrini Riccardo; Lenstra J The characterization of goat genetic diversity: Towards a genomic approach. Small Ruminant Research  Volume 121, Issue 1, September 2014, Pages 58–72 doi:10.1016/j.smallrumres.2014.06.010

Bonfiglio S, Ginja C, De Gaetano A, Achilli A, Olivieri A, Colli L, Tesfaye K, Agha SH, Gama LT, Cattonaro F, Penedo MC, Ajmone-Marsan Paolo, Torroni A, Ferretti L. Origin and spread of Bos taurus: new clues from mitochondrial genomes belonging to haplogroup T1. PLoS One. 2012;7(6):e38601. doi: 10.1371/journal.pone.0038601. Epub 2012 Jun 7.